Chemical classification systems attempt to classify as elements or compounds according to certain chemical functional or structural properties. Whereas the structural properties are largely intrinsic, functional properties and the derived classifications depend to a certain degree on the type of chemical interaction partners on which the function is exerted. Sometimes other criteria like purely physical ones (e.g. molecular weight) or - on the other hand - functional properties above the chemical level are also used for building chemical taxonomies.
Some systems mix the various levels, resulting in hierarchies where the domains are slightly confused, for example having structural and functional aspects end up on the same level. Whereas chemical function is closely dependent on chemical structure, the situation becomes more involved when e.g. pharmacological function is integrated, because the QSAR can usually not be directly computed from structural qualities.
Physico-chemical classification 
- by molecular weight
- by electrical charge: uncharged, positively, negatively, partially charged
- pH value
Structural classification 
Usually binary classifications and combinations thereof:
- radicals, non-radicals
- cyclic vs. linear
- type of major bond: ionic (salts) vs. covalent, metallic
- organic vs. inorganic compounds (depends on whether carbon is the main constituent or not)
- (in organic chemistry)
Functional classification 
Chemical function 
Pharmacological/biological function 
See also: biological activity
Mixed systems 
See also 
- http://www.ebi.ac.uk/chebi/ Chemical Entities of Biological Interest
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